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अखिल भारतीय आयुर्विज्ञान संस्थान, नई दिल्ली
All India Institute Of Medical Sciences, New Delhi
कॉल सेंटर:  011-26589142

Siddhartha Kundu

Dr. Siddhartha Kundu, MD, PhD

(Assistant Professor)

 

Address:

Room No. 3027B

Department of Biochemistry, AIIMS, Ansari Nagar, New Delhi – 110029

Email:

यह ईमेल पता spambots से संरक्षित किया जा रहा है. आप जावास्क्रिप्ट यह देखने के सक्षम होना चाहिए. ; यह ईमेल पता spambots से संरक्षित किया जा रहा है. आप जावास्क्रिप्ट यह देखने के सक्षम होना चाहिए.

Telephone:

+91-11-26546514; +91-9818054915

Public profiles:

https://orcid.org/0000-0003-3962-776X

loop.frontiersin.org/people/174292/overview

https://www.researchgate.net/profile/Siddhartha_Kundu3

https://scholar.google.co.in/citations?user=gBl-tT0AAAAJ&hl=en

Editorial work

Reviewer (Plos One, Bioinformatics, Indian Journal of Medical Research)

Research focus

Mathematical Biochemistry and Theoretical Bioinformatics

Areas of Interest

·Mathematical modelling and simulations of complex biochemical systems

·Mathematical analyses of biochemical reactions

·Algorithms for molecular biology &Theoretical Biophysics

 

 

Servers/Software developed

http://204.152.217.16/Fe2OG.html

Fe(2)OG, is an integrated web server which can:

a)Predict non-haem iron(II)- and 2-oxoglutarate-dependent dioxygenase activity in a protein sequence.

b)Search a pre-compiled and analyzed database of non-haem iron(II)- and 2-oxoglutarate-dependent dioxygenase like sequences.

Please note:

This supersedes all previous versions which includes:

 

http://comp-biol.theacms.in/H2OGpred.html,

http://comp-biol.theacms.in/DB2OG.html.

Educational qualifications

Degree

Subject

University/Institution

Year

PhD

Computational Biology & Bioinformatics

School of Computational and Integrative Sciences (SCIS),

Jawaharlal Nehru University, New Mehrauli Road, New Delhi 110067

2014-2018

MD

Biochemistry

All India Institute of Medical Sciences (AIIMS),

Ansari Nagar, New Delhi 110029

1999-2001

MBBS

Pre-&Para-/Medical/ Surgical subjects

University College of Medical Sciences (UCMS),

Dilshad Garden, New Delhi 110095

1992-1996

Memberships

1.

Society for Mathematical Biology (SMB): Life member (ID:36503496)

2.

European Society for Mathematical and Theoretical Biology (ESMTB) : ID: 50143836

Research publications (complete citations)

2020

  1. Kundu S#*. Mathematical model of a short translatable G-quadruplex and an assessment of its relevance to misfolding-induced proteostasis. Math Biosci Eng.2020, 17(3): 2470-2493. PMID: 32233549.[MBE2020] (Additional Material)

2019

  1. Kundu S#*. Insights into the mechanism(s) of digestion of crystalline cellulose by plant class C GH9 endoglucanases. J Mol Model. 2019 Jul 23;25(8):240. PMID: 31338614 [JMM-2019] (Additional Material)

2018

  1. Kundu S#*. Mathematical basis of predicting dominant function in protein sequences by a generic HMM-ANN algorithm. ActaBiotheor. 2018 Jun;66(2):135-148. PMID: 29700659,32385619[ACBI2018] (Additional Material)
  2. Kundu S*, Sharma R*. Origin, evolution, and divergence of plant class C GH9 endoglucanases. BMC Evol. Biol. 2018 May 30;18(1):79. PMID: 29848310.[BMEB2018] (Additional Material)

2017

  1. Kundu S#*. Mathematical basis of improved protein subfamily classification by a HMM-based sequence filter. Math Biosci. 2017 Nov;293:75-80. doi:10.1016/j.mbs.2017.09.001. Epub 2017 Sep 13. PubMed PMID: 28916136. [MBS2017]

2016

  1. Kundu S*, Sharma R*. In silico Identification and Taxonomic Distribution of Plant Class C GH9 Endoglucanases. Front Plant ci. 2016 Aug 12;7:1185. PMID: 27570528 [FPS2016] (Additional Material).
  2. Kundu S#*. Stochastic modelling suggests that an elevated superoxide anion-hydrogen peroxide ratio can drive extravascular phagocyte transmigration by lamellipodium formation. J Theor Biol. 2016 Oct 21;407:143-54. PMID: 27380944. [JTB2016] (Additional Material).

2015

  1. Kundu S#*. Co-operative intermolecular kinetics of 2-oxoglutarate dependent dioxygenases may be essential for system-level regulation of plant cell physiology. Front Plant Sci. 2015 Jul 15;6:489. PMID: 26236316.[FPS2015a] (Additional Material).
  2. Kundu S#*. Unity in diversity, a systems approach to regulating plant cellphysiology by 2-oxoglutarate-dependent dioxygenases. Front Plant Sci. 2015 Mar 11;6:98. PMID: 25814993 [FPS2015b] (Additional Material)..

2012

  1. Kundu S#*. Distribution and prediction of catalytic domains in 2-oxoglutarate dependent dioxygenases. BMC Res Notes. 2012 Aug 4;5:410. PMID: 22862831 [BMRS2012] (Additional Material).

2011

  1. Kundu S*, Subodh S. Gradient sensing in vectorial chemotaxis – a novel role for Reactive Oxygen Species. International Journal of Trends in Medicine. 2011 1; 54-59. [IJTM2011]

2002

  1. Singh N, Khanna N, Sharma H, Kundu S, Azmi S. Insights into the molecular mechanism of apoptosis induced by TNF-alpha in mouse epidermal JB6-derived RT-101cells. Biochem Biophys Res Commun. 2002 Jul 5;295(1):24-30. PMID:12083761. [BBRC2002]
 

(#) Single author; (*) Corresponding author

Positions held

Position

Subject/Work

University/Institution

Year

Assistant Professor

Biochemistry

All India Institute of Medical Sciences (AIIMS),
Ansari Nagar, New Delhi 110029

10/2019 -

Associate Professor

Biochemistry

Army College of Medical Sciences (ACMS),
Brar Square, Delhi Cantt., New Delhi – 110010

2015-2018

Dr. Baba SahebAmbedkar Medical College and Hospital (BSAMCH), Govt. of NCT of Delhi, Rohini, Delhi 110085 2018-2019

Assistant Professor

Biochemistry

Army College of Medical Sciences (ACMS),
Brar Square, Delhi Cantt.,New Delhi – 110010

2009-2014

Scientist ‘D’ (Medical)

Program Officer

Indian Council of Medical Research (ICMR),
V. RamalingaswamiBhawan,

Ansari Nagar, New Delhi 110029

07-10/2019

Senior Level Consultant

Program Director

Information Technology Research Academy (ITRA),
Digital India Corporation (formerly Media Lab Asia),
Ministry of Electronics and Information Technology,

C-DOT campus, New Delhi 110030
2016-2017

Research Consultant

Computational Biology

India Research Labs (IRL) IBM 2002-2003

Research Associate/Fellow/Scientist

PostDoctoral work

International Center for Genetic Engineering and Biotechnology (ICGEB)

05-10/2014

National Institute of Immunology (NII) 2005-2008
ICMR-National Institute of Pathology (NIOP) 2003-2004
Indian Institute of Technology Delhi (IITD) 01-05/2002
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